topInteracters {rnaCrosslinkOO}

topInteracters

Description

This method prints the top transcripts that have the most duplexes assigned that interact with the transcript of interest

Usage

topInteracters(cds, ntop = 10, sds = TRUE)

Arguments

cds

a rnaCrosslinkDataSet object

ntop

the number of entries to display

sds

known bug, doesn't work for small data sets fix incoming

Value

A table, the number of counts per sample per interacting transcript

Examples

cds = makeExamplernaCrosslinkDataSet()
topInteracters(cds, sds = TRUE)