printClustersFast {rnaCrosslinkOO}

printClustersFast

Description

Makes a table with the coordinates of the clusters

Usage

printClustersFast(dir, clustering, highest_clusters, left, right)

Arguments

dir

the directory that contains the *Inputrids.Input files

clustering

The output from the iGraph function cluster_walktrap for the (made with adjacency matrix input)

highest_clusters

The cluster you are interested in keeping

left

list created with InputToGRanges (but just the left section of the list)

right

list created with InputToGRanges (but just the right section of the list)

Details

Does the same as printClusters but is a lot faster and does not create plots of each cluster

Value

A table of clusters and coordinates