plotMatrices {rnaCrosslinkOO}

Plots a number of contact maps to file of each sample for a stage in the analysis

Description

Plots a number of contact maps to file of each sample for a stage in the analysis

Usage

plotMatrices(
  cds,
  type = "original",
  directory = 0,
  a = 1,
  b = 50,
  c = 1,
  d = 50,
  h = 3
)

Arguments

cds

A rnaCrosslinkDataSet object

type

The analysis stage to plot

directory

An output directory for the heatmap (use 0 for no output)

a

To make a subsetted plot (left value on x)

b

To make a subsetted plot (right value on x)

c

To make a subsetted plot (left value on y)

d

To make a subsetted plot (right value on y)

h

Height of image (inches) ( only useful if plotting)

Value

A heatmap of the reads in the analysis stage chosen

Examples

cds = makeExamplernaCrosslinkDataSet()

plotMatrices(cds,
            b = rnaSize(cds),
            d = rnaSize(cds))