plotClusterAgreement {rnaCrosslinkOO}

Plot a heatmap that plots the agreements between replicates after clusterrnaCrosslink has been performed

Description

Plot a heatmap that plots the agreements between replicates after clusterrnaCrosslink has been performed

Usage

plotClusterAgreement(cds, analysisStage = "originalClusters")

Arguments

cds

A rnaCrosslinkDataSet object

analysisStage

The stage of the analysis to plot

Value

A heatmap of the agreement between replicates in the analysis stage chosen

Examples

cds = makeExamplernaCrosslinkDataSet()


clusteredCds = clusterrnaCrosslink(cds,
                cores = 1,
                stepCount = 1,
                clusterCutoff = 0)


plotClusterAgreement(cds)