getInteractions {rnaCrosslinkOO}

getInteractions

Description

This method returns a table of interactions of an RNA (interactor) on the RNA of interest.

Usage

getInteractions(cds, interactors)

Arguments

cds

a rnaCrosslinkDataSet object

interactors

A vector containing the names of RNAs to show interactions with

Value

A table showing the read coverage of the specified interacting RNAs

Examples

cds = makeExamplernaCrosslinkDataSet()
getInteractions(cds, c("transcript1","transcript2"))