findBasePairsRNAfold {rnaCrosslinkOO}

findBasePairsRNAfold

Description

Folds the clusters using Vienna RNA duplex

Usage

findBasePairsRNAfold(startPos, endPos, seqs, fasta, shape)

Arguments

startPos

Start of the cluster side x

endPos

End of the cluster side x

seqs

Sequence of x

fasta

rnaRefs

shape

shape reactivities

Value

A table of clusters and coordinates with folds