findBasePairsRNAcoFold2 {rnaCrosslinkOO}

findBasePairsRNAcoFold2

Description

Folds the clusters using Vienna RNAfold

Usage

findBasePairsRNAcoFold2(
  startPos1,
  endPos1,
  seq1,
  startPos2,
  endPos2,
  seq2,
  fasta,
  shape
)

Arguments

startPos1

Start of the cluster side x

endPos1

End of the cluster side x

seq1

Sequence of x

startPos2

Start of the cluster side y

endPos2

End of the cluster side y

seq2

Sequence of y

fasta

rnaRefs

shape

shape reactivities

Value

A table of clusters and coordinates with folds