clusterrnaCrosslink {rnaCrosslinkOO}

clusterrnaCrosslink

Description

This method clusters the duplexes.

Usage

clusterrnaCrosslink(cds, cores = 3, stepCount = 2, clusterCutoff = 20)

Arguments

cds

rnaCrosslinkDataSet object created with rnaCrosslinkDataSet

cores

numeric - The number of cores to use

stepCount

Stringency for clustering

clusterCutoff

The minimum number of reads a cluster requires

Value

A rnaCrosslinkDataSet object

Examples

cds = makeExamplernaCrosslinkDataSet()

clusterrnaCrosslink(cds,
                cores = 1,
                stepCount = 1,
                clusterCutoff = 0)