clusterNumbers {rnaCrosslinkOO}

clusterNumbers

Description

This method prints a table showing the number of clusters in each step of the analysis

Usage

clusterNumbers(knowClusteredCds, rna)

Arguments

knowClusteredCds

A rnaCrosslinkDataSet object after clustering has been performed

rna

The RNA ID of interest - use rna(cdsObject).

Value

A data.frame shoing the number of clusters for each sample

Examples

cds = makeExamplernaCrosslinkDataSet()

clusteredCds = clusterrnaCrosslink(cds,
                cores = 1,
                stepCount = 1,
                clusterCutoff = 1)
clusterNumbers(clusteredCds)