model_search_parallel {rhierbaps}

model_search_parallel

Description

Clusters DNA alignment using independent loci model

Usage

model_search_parallel(
  snp.object,
  partition,
  round.types,
  quiet = FALSE,
  n.extra.rounds = 0,
  n.cores = 1
)

Arguments

snp.object

A snp.object containing the processed SNP data.

partition

An integer vector indicating an initial starting partition.

round.types

A vector indicating which series of moves to make.

quiet

Whether to suppress progress information (default=FALSE).

n.extra.rounds

The number of additional rounds to perform after the default hierBAPS settings (default=0). If set to Inf it will run until a local optimum is reached (this might take a long time).

n.cores

The number of cores to use.

Value

an optimised partition and marginal llk