gb_fasta_get {restez} | R Documentation |
Get fasta from GenBank
Description
Get sequence and definition data in FASTA format. Equivalent to
rettype='fasta'
in rentrez::entrez_fetch()
.
Usage
gb_fasta_get(id, width = 70)
Arguments
id |
character, sequence accession ID(s) |
width |
integer, maximum number of characters in a line |
Value
named vector of fasta sequences, if no results found NULL
See Also
Other get:
gb_definition_get()
,
gb_organism_get()
,
gb_record_get()
,
gb_sequence_get()
,
gb_version_get()
Examples
library(restez)
restez_path_set(filepath = tempdir())
demo_db_create(n = 5)
(fasta <- gb_fasta_get(id = 'demo_1'))
(fastas <- gb_fasta_get(id = c('demo_1', 'demo_2')))
# delete demo after example
db_delete(everything = TRUE)
[Package restez version 2.1.4 Index]