add_rcrd_log {restez} | R Documentation |
Log files added to the SQL database in the restez path
Description
This function is called whenever sequence files have been successfully added to the nucleotide SQL database. Row entries are added to 'add_lot.tsv' in the user's restez path containing the filename, GB release numbers and the time of successful adding. The log is to help users keep track of when sequences have been added.
Usage
add_rcrd_log(fl)
Arguments
fl |
filename, character |
See Also
Other private:
cat_line()
,
char()
,
check_connection()
,
cleanup()
,
connected()
,
connection_get()
,
db_download_intern()
,
db_sqlngths_get()
,
db_sqlngths_log()
,
dir_size()
,
dwnld_path_get()
,
dwnld_rcrd_log()
,
entrez_fasta_get()
,
entrez_gb_get()
,
extract_accession()
,
extract_by_patterns()
,
extract_clean_sequence()
,
extract_definition()
,
extract_features()
,
extract_inforecpart()
,
extract_keywords()
,
extract_locus()
,
extract_organism()
,
extract_seqrecpart()
,
extract_sequence()
,
extract_version()
,
file_download()
,
filename_log()
,
flatfile_read()
,
gb_build()
,
gb_df_create()
,
gb_df_generate()
,
gb_sql_add()
,
gb_sql_query()
,
gbrelease_check()
,
gbrelease_get()
,
gbrelease_log()
,
has_data()
,
identify_downloadable_files()
,
last_add_get()
,
last_dwnld_get()
,
last_entry_get()
,
latest_genbank_release_notes()
,
latest_genbank_release()
,
message_missing()
,
mock_def()
,
mock_gb_df_generate()
,
mock_org()
,
mock_rec()
,
mock_seq()
,
predict_datasizes()
,
readme_log()
,
restez_connect()
,
restez_disconnect()
,
restez_path_check()
,
restez_rl()
,
search_gz()
,
seshinfo_log()
,
setup()
,
slctn_get()
,
slctn_log()
,
sql_path_get()
,
status_class()
,
stat()
,
testdatadir_get()