| plot.rdaccahp {rdacca.hp} | R Documentation |
Plot for a rdacca.hp object
Description
Plot for a rdacca.hp object
Usage
## S3 method for class 'rdaccahp'
plot(x, plot.perc = FALSE, color = NULL, ...)
Arguments
x |
A |
plot.perc |
Logical;if TRUE, the bar plot (based on ggplot2 package) of the percentage to individual effects of variables or groups towards total explained variation, the default is FALSE to show plot with original individual effects. |
color |
Color of variables. |
... |
unused |
Value
a ggplot object
Author(s)
Jiangshan Lai lai@njfu.edu.cn
Yao Liu liuyao@stu.xmu.edu.cn
Examples
library(vegan)
data(mite)
data(mite.env)
mite.hel <- decostand(mite, "hellinger")
avc<-rdacca.hp(mite.hel,mite.env,method="RDA",type="adjR2")
plot(avc)
plot(avc, plot.perc=TRUE)
avc<-rdacca.hp(mite.hel,mite.env[,1:3],method="RDA",type="adjR2",var.part=TRUE)
plot(avc,color = c("#8DD3C7", "#FFFFB3", "#BEBADA"))
[Package rdacca.hp version 1.1-0 Index]