taxonomy {rbiom}

Get the taxonomy table.

Description

Get the taxonomy table.

Usage

taxonomy(biom)

Arguments

biom

A BIOM object, as returned from read.biom.

Value

A character matrix of the named taxonomies in biom.

See Also

Other accessor functions: counts(), info(), metadata(), nsamples(), ntaxa(), phylogeny(), sample.names(), sequences(), taxa.names(), taxa.ranks()

Examples

    library(rbiom)
    
    infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
    biom <- read.biom(infile)
    
    taxonomy(biom)[1:4,]