counts {rbiom}

Get the abundance counts.

Description

Get the abundance counts.

Usage

counts(biom)

Arguments

biom

A BIOM object, as returned from read.biom.

Value

A numeric matrix of the sample abundance counts in biom.

See Also

Other accessor functions: info(), metadata(), nsamples(), ntaxa(), phylogeny(), sample.names(), sequences(), taxa.names(), taxa.ranks(), taxonomy()

Examples

    library(rbiom)
    
    infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
    biom <- read.biom(infile)
    
    counts(biom)[1:4,1:5]