rba_uniprot_uniparc_bestguess {rbioapi} | R Documentation |
Get UniParc Longest Sequence for Entries
Description
This function returns the UniParc Entry with a cross-reference to the longest active UniProtKB sequence (preferably from Swiss-Prot and if not then TrEMBL). If it finds more than one longest active UniProtKB sequence it returns 400 (Bad Request) error response with the list of cross references found.
Usage
rba_uniprot_uniparc_bestguess(
upi = NULL,
accession = NULL,
db_id = NULL,
gene = NULL,
taxid = NULL,
...
)
Arguments
upi |
unique UniParc Identifier. |
accession |
UniProtKB primary or secondary accession(s). You can supply up to 100 accession numbers. |
db_id |
Protein ID in the cross-reference (external) database. You can supply up to 100 IDs. |
gene |
UniProt gene name(s). You can supply up to 20 gene names. |
taxid |
NIH-NCBI Taxon ID. You can supply up to 20 taxon IDs. |
... |
rbioapi option(s). See |
Value
A list where each element correspond to a UniParc entry.
Corresponding API Resources
"GET https://ebi.ac.uk/proteins/api/uniparc/bestguess"
References
The UniProt Consortium, UniProt: the universal protein knowledgebase in 2021, Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D480–D489, https://doi.org/10.1093/nar/gkaa1100
Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
See Also
Other "UniProt - UniParc":
rba_uniprot_uniparc()
,
rba_uniprot_uniparc_search()
,
rba_uniprot_uniparc_sequence()
Examples
rba_uniprot_uniparc_bestguess("UPI00000000C9")