rba_uniprot_taxonomy_lca {rbioapi} | R Documentation |
Get Lowest Common Ancestor (LCA) of Two Taxonomy Nodes
Description
Use this function to retrieve lowest common ancestor (LCA) of two taxonomy nodes in UniProt Taxonomy database
Usage
rba_uniprot_taxonomy_lca(ids, ...)
Arguments
ids |
(numeric) Numeric vector of NCBI taxonomic identifiers, with minimum length of two. |
... |
rbioapi option(s). See |
Value
A list with UniProt taxonomy information of your supplied taxonomy elements.
Corresponding API Resources
"GET https://ebi.ac.uk/proteins/api/ancestor/{ids}"
References
The UniProt Consortium, UniProt: the universal protein knowledgebase in 2021, Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D480–D489, https://doi.org/10.1093/nar/gkaa1100
Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
See Also
Other "UniProt - Taxonomy":
rba_uniprot_taxonomy()
,
rba_uniprot_taxonomy_lineage()
,
rba_uniprot_taxonomy_name()
,
rba_uniprot_taxonomy_path()
,
rba_uniprot_taxonomy_relationship()
Examples
rba_uniprot_taxonomy_lca(c(9606,10090,9823,7712))