rba_reactome_species {rbioapi} | R Documentation |
Get Reactome Species
Description
Use this function to retrieve a table of Available species in Reactome.
Usage
rba_reactome_species(only_main = FALSE, ...)
Arguments
only_main |
Logical: If set to TRUE, will only return species which have either manually-curated or computationally inferred pathways. |
... |
rbioapi option(s). See |
Value
Data frame where each row is a species and columns are pertinent information.
Corresponding API Resources
"GET https://reactome.org/ContentService/data/species/all"
"GET https://reactome.org/ContentService/data/species/main"
References
Marc Gillespie, Bijay Jassal, Ralf Stephan, Marija Milacic, Karen Rothfels, Andrea Senff-Ribeiro, Johannes Griss, Cristoffer Sevilla, Lisa Matthews, Chuqiao Gong, Chuan Deng, Thawfeek Varusai, Eliot Ragueneau, Yusra Haider, Bruce May, Veronica Shamovsky, Joel Weiser, Timothy Brunson, Nasim Sanati, Liam Beckman, Xiang Shao, Antonio Fabregat, Konstantinos Sidiropoulos, Julieth Murillo, Guilherme Viteri, Justin Cook, Solomon Shorser, Gary Bader, Emek Demir, Chris Sander, Robin Haw, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D’Eustachio, The reactome pathway knowledgebase 2022, Nucleic Acids Research, 2021;, kab1028, https://doi.org/10.1093/nar/gkab1028
Griss J, Viteri G, Sidiropoulos K, Nguyen V, Fabregat A, Hermjakob H. ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis. Mol Cell Proteomics. 2020 Sep 9. doi: 10.1074/mcp. PubMed PMID: 32907876.
Examples
rba_reactome_species()
rba_reactome_species(only_main = TRUE)