rba_reactome_orthology {rbioapi}R Documentation

Get Orthologous (Computationally Inferred) Events

Description

Reactome incorporate manually curated human reactions and PANTHER's protein homology data to Computationally infer events in other eukaryotic species.

Usage

rba_reactome_orthology(event_ids, species_dbid, ...)

Arguments

event_ids

Human Reactome event ID(s) to retrieve their orthologous events.

species_dbid

Reactome database ID (DbId) of the target species. (e.g Mus musculus is 48892). See rba_reactome_species or Reactome Data Schema: Entries: Species.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Details

In version 73 (11 June 2020), using an orthology-based approach, Homo sapiens events was projected to 18,654 orthologous pathways (with 81,835 orthologous proteins) in 15 non-human species.
See Reactome Computationally Inferred Events for more information.

Value

List containing found Orthologous event(s) in your supplied species and their pertinent information.

Corresponding API Resources

"POST https://reactome.org/ContentService/data/orthologies/ids/ species/{speciesId}"

References

See Also

rba_reactome_analysis_species

Examples


rba_reactome_orthology(event_ids = c("R-HSA-6799198", " R-HSA-72764"),
    species_dbid = 49633)



[Package rbioapi version 0.8.1 Index]