rba_panther_mapping {rbioapi} | R Documentation |
Map A Gene-set to PANTHER Database
Description
Using this function, you can search your genes in PANTHER database and retrieve attributes and annotations associated to your genes.
Usage
rba_panther_mapping(genes, organism, ...)
Arguments
genes |
Character vector of genes identifiers with maximum length of 1000. Can be any of: Ensemble gene ID, Ensemble protein ID, Ensemble transcript ID, Entrez gene ID, gene symbol, NCBI GI, HGNC ID, International protein index ID, NCBI UniGene ID, UniProt accession and/or UniProt ID. |
organism |
(numeric) NCBI taxon ID. run |
... |
rbioapi option(s). See |
Value
A list containing your unmapped inputs and mapped genes with pertinent information.
Corresponding API Resources
"GET https://www.pantherdb.org/services/oai/pantherdb/geneinfo"
References
Huaiyu Mi, Dustin Ebert, Anushya Muruganujan, Caitlin Mills, Laurent-Philippe Albou, Tremayne Mushayamaha, Paul D Thomas, PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API, Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D394–D403, https://doi.org/10.1093/nar/gkaa1106
See Also
Other "PANTHER":
rba_panther_enrich()
,
rba_panther_family()
,
rba_panther_homolog()
,
rba_panther_info()
,
rba_panther_ortholog()
,
rba_panther_tree_grafter()
Examples
rba_panther_mapping(genes = c("Cd40", 7124, "ENSG00000203747", "P33681"),
organism = 9606)