rba_jaspar_taxons {rbioapi}

List available taxonomic groups in JASPAR

Description

JASPAR organizes matrix profiles from multiple species in six taxonomic groups. Use this function to retrieve a list of available taxonomic groups in a JASPAR database release.

Usage

rba_jaspar_taxons(release = 2024, ...)

Arguments

release

Numeric: (default = 2024) Which JASPAR database release to use? Available options are: 2024, 2022, 2020, 2018, 2016, and 2014.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A data frame with information of available species.

Corresponding API Resources

"GET https://jaspar.elixir.no/api/v1/taxon/"

References

• Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Chèneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles Nucleic Acids Res. in_press; doi: 10.1093/nar/gkad1059

• Khan, A. and Mathelier, A. JASPAR RESTful API: accessing JASPAR data from any programming language. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx804

• JASPAR API Documentation

• Citations note on JASPAR website

See Also

Other "JASPAR": rba_jaspar_collections(), rba_jaspar_collections_matrices(), rba_jaspar_matrix(), rba_jaspar_matrix_search(), rba_jaspar_matrix_versions(), rba_jaspar_releases(), rba_jaspar_sites(), rba_jaspar_species(), rba_jaspar_species_matrices(), rba_jaspar_taxons_matrices(), rba_jaspar_tffm(), rba_jaspar_tffm_search()

Examples

rba_jaspar_taxons(release = 2024)