rba_jaspar_matrix_versions {rbioapi} | R Documentation |
List matrix profile versions associated with a base ID
Description
Since JASPAR release 2010, the matrix profiles are versioned; So, a matrix profile Identifier has "base_id.version" naming schema. Using this function you can retrieve a list of matrix profiles associated with a base (stable) ID.
Usage
rba_jaspar_matrix_versions(base_id, order = NULL, ...)
Arguments
base_id |
Character: A base (stable) Identifier. A matrix profile identifier has "base_id.version" naming schema |
order |
Character: A character string or a vector of character strings
of field names that will be used to order the results.
|
... |
rbioapi option(s). See |
Value
A data frame of matrix profiles' versions information.
Corresponding API Resources
"GET https://jaspar.elixir.no/api/v1/matrix/{base_id}/versions/"
References
Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Chèneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles Nucleic Acids Res. in_press; doi: 10.1093/nar/gkad1059
Khan, A. and Mathelier, A. JASPAR RESTful API: accessing JASPAR data from any programming language. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx804
See Also
Other "JASPAR":
rba_jaspar_collections()
,
rba_jaspar_collections_matrices()
,
rba_jaspar_matrix()
,
rba_jaspar_matrix_search()
,
rba_jaspar_releases()
,
rba_jaspar_sites()
,
rba_jaspar_species()
,
rba_jaspar_species_matrices()
,
rba_jaspar_taxons()
,
rba_jaspar_taxons_matrices()
,
rba_jaspar_tffm()
,
rba_jaspar_tffm_search()
Examples
rba_jaspar_matrix_versions("MA0600")