summarise_experimentParameters {rSHAPE}

This function will use output from summarise_experimentFiles to locate all parameter files and then report on all those parameters for the jobs that were run. This will save an RData file which will contain one object: all_parmInfo

Description

This function will use output from summarise_experimentFiles to locate all parameter files and then report on all those parameters for the jobs that were run. This will save an RData file which will contain one object: all_parmInfo

Usage

summarise_experimentParameters(func_workEnvir = new.env(),
  func_saveFile = getOption("shape_procExp_filenames")["parameters"],
  func_experimentDir = getOption("shape_workDir"),
  func_refFile = getOption("shape_procExp_filenames")["fileList"])

Arguments

func_workEnvir

This is an environment used to load files with the load function. It's used to encapsulate the loaded information to a controlled space.

func_saveFile

This is the filepath and filename (ending in .RData please) to which the results of this step will be saved.

func_experimentDir

This is the filepath to the root directoy under which all your experimental files can be found.

func_refFile

This is the filepath to the reference file that contains information regarding all the processed files for the rSHAPE experiment.

Note

There is no example as this cannot work without a complete rSHAPE experiment to be analysed.