set_DepbySite_ancestFitness {rSHAPE}

This is a convenience function for setting the dependent fitness values of sites in an NK fitness landscape model. This allows the dependent fitness of sites to be calculated once and then referenced as mutations occur. It makes exploring this style of fitness landscape a bit more computationally friendly - as it generally isn't.

Description

This is a convenience function for setting the dependent fitness values of sites in an NK fitness landscape model. This allows the dependent fitness of sites to be calculated once and then referenced as mutations occur. It makes exploring this style of fitness landscape a bit more computationally friendly - as it generally isn't.

Usage

set_DepbySite_ancestFitness(func_simModel = getOption("shape_simModel"),
  func_const_siteBystate_fitnessMat = getOption("shape_const_siteBystate_fitnessMat"),
  func_const_NK_interactionMat = getOption("shape_const_NK_interactionMat"))

Arguments

func_simModel

This is the fitness landscape model being simulated

func_const_siteBystate_fitnessMat

This is the sitewise independent fitness contributions in the fitness landscape

func_const_NK_interactionMat

This defines the sitewise dependencies based on the K interactions.

Value

Either the dependent sitewise fitness contributions in an NK fitness landscape, or NA.

Note

There is no example as this cannot work outisde of a runSHAPE call, it requires data produced by the simulation experiment.