plotSEA {rSEA}

topSEA

Description

returns a plotof SEA-chart which illustrates proportion of discoveries per pathway.

Usage

plotSEA(object, by = "TDP.estimate", threshold = 0.005, n = 20)

Arguments

object

A SEA-chart object which is the output of SEA function

by

the Variable which will we mapped. It should be either the TDP estimate or TDP bound.The default is TDP bound.

threshold

A real number between 0 and 1. Which will be used as a visual aid to distinguish significant pathways

n

Integer. Number of rows from SEA-chart object to be plotted.

Value

Returns a plot of SEA_chart according to the selected arguments

Author(s)

Mitra Ebrahimpoor

[e-mail]

References

Mitra Ebrahimpoor, Pietro Spitali, Kristina Hettne, Roula Tsonaka, Jelle Goeman, Simultaneous Enrichment Analysis of all Possible Gene-sets: Unifying Self-Contained and Competitive Methods, Briefings in Bioinformatics,bbz074

See Also

SEA

Examples

#See the examples for \code{\link{SEA}}