R: Plot LOD score for self or neighbor QTL effects

plot_nei {rNeighborQTL}

R Documentation

Plot LOD score for self or neighbor QTL effects

Description

Plot LOD curves for a genome scan of self and neighbor QTL effects.

Usage

plot_nei(res, type = c("neighbor", "self", "int"), chr = NULL, th = NULL, ...)

Arguments

`res`	Output results of `scan_neighbor()`.
`type`	Plot `"self"`, `"neighbor"` or `"int"` effects. Default is `"neighbor"` effects.
`chr`	An optional vector to select chromosome numbers to be plotted. If `NULL`, shown are all chromosomes.
`th`	Add genome-wide threshold by user-defined vectors or Bonferroni correction. Default is no thresholds added.
`...`	Arguments to be passed to `plot()`.

Details

For the type argument, "int" can be selected to draw the results of int_neighbor(). In this case, the res object and type must match, otherwise it returns an error message.

Author(s)