excludeOutliers {rADA} | R Documentation |
Exclude Outliers from Melted Assay Dataframe
Description
This function excludes outliers from the assay dataframe based on grDevices::boxplot.stats(). This outlier removal method is based on Tukey's test where outliers are removed if outside the established interquartile range.
Usage
excludeOutliers(
assay.df.melted,
data.transf = FALSE,
transf.method = c("log10", "ln")
)
Arguments
assay.df.melted |
A data.frame produced by assayMelt() |
data.transf |
Should the data should be transformed before normality is evaluated |
transf.method |
If data.transf is TRUE, which method should be used. Can choose between 'log10' and 'ln'. |
Value
A melted data.frame
Author(s)
Emma Gail
Examples
assay.df.melted <- assayMelt(assay.df = lognormAssay, exp.name = 'Experiment1')
excludeOutliers(assay.df.melted, data.transf = TRUE, transf.method = 'log10')
[Package rADA version 1.1.9 Index]