| summary.jive {r.jive} | R Documentation |
Summarize a JIVE Decomposition
Description
Provides a summary of JIVE output. Displays the method used for rank selection, the chosen ranks, and a table of the proportion of variance attributable to joint structure, individual structure, and residual variance. print.jive only displays the variance table.
Usage
## S3 method for class 'jive'
summary(object, ...)
## S3 method for class 'jive'
print(x, ...)
Arguments
object |
An object of class "jive". |
x |
An object of class "jive". |
... |
Additional arguments. |
Value
Returns a list.
Method |
a string containing the method used for rank selection. |
Ranks |
the method used for rank selection. |
Variance |
the method used for rank selection. |
Author(s)
Michael J. O'Connell and Eric F. Lock
References
Lock, E. F., Hoadley, K. A., Marron, J. S., & Nobel, A. B. (2013). Joint and individual variation explained (JIVE) for integrated analysis of multiple data types. The Annals of Applied Statistics, 7(1), 523-542.
O'Connell, M. J., & Lock, E.F. (2016). R.JIVE for Exploration of Multi-Source Molecular Data. Bioinformatics advance access: 10.1093/bioinformatics/btw324.
See Also
Examples
##Load JIVE results (using default settings) for simulated data
##as in Section 2.4 of Lock et al., 2013,
##with rank 1 joint structure, and rank 1 individual structure for each dataset
data(SimResults)
# Summary method
summary(Results)
# Print method
Results