gutlength {qtlbook} | R Documentation |
Gut length intercross data
Description
Data from a mouse intercross experiment on gut length, including both sexes.
All individuals carry the mutation.
Usage
gutlength
Format
An object of class cross
. See qtl::read.cross()
for details.
Details
A mouse intercross between C3HeBFeJ (C3) and C57BL/6J (B6), with one F1
parent carrying the mutation. There are 1068
mice from reciprocal intercrosses. Over 2000 mice were generated, but only
those individuals heterozygous at
were genotyped
and included in the data set.
is on chromosome 15, and so that
chromosome exhibits an unusual segregation pattern. Some mice received the
mutation from their mother and some from their father.
The primary phenotype here is gut length (in cm). The phenotype
cross
indicates the cross used to generate an animal.
Source
E. Michelle Southard-Smith, Division of Genetic Medicine, Department of Medicine, Vanderbilt University School of Medicine, michelle.southard-smith@vanderbilt.edu
References
Owens, S. E., Broman, K. W., Wiltshire, T., Elmore, J. B.,
Bradley, K. M., Smith, J. R. and Southard-Smith, E. M. (2005) Genome-wide
linkage identifies novel modifier loci of aganglionosis in the
model of Hirschsprung disease. Hum. Mol.
Genet. 14, 1549–1558.
Broman, K. W., Sen, 'S, Owens, S. E., Manichaikul, A., Southard-Smith, E. M. and Churchill G. A. (2006) The X chromosome in quantitative trait locus mapping. Genetics 174, 2151–2158.
See Also
iron
, myocard
, nf1
,
ovar
, trout
Examples
data(gutlength)
library(qtl)
plot(gutlength)