scan_multi_oneqtl_perm {qtl2pleio} | R Documentation |
Permute the phenotypes matrix and then scan the genome. Record the genomewide greatest LOD score for each permuted data set.
Description
Permute the phenotypes matrix and then scan the genome. Record the genomewide greatest LOD score for each permuted data set.
Usage
scan_multi_oneqtl_perm(
probs_list,
pheno,
kinship_list = NULL,
addcovar = NULL,
n_perm = 1,
cores = 1
)
Arguments
probs_list |
a list of founder allele probabilities, one array per chromosome |
pheno |
a matrix of trait values |
kinship_list |
a list of kinship matrices, one per chromosome |
addcovar |
a matrix of covariate values |
n_perm |
positive integer for the number of permuted data sets to scan. |
cores |
number of cores for parallelization |
Value
a vector of 'n_perm' max lod statistics
[Package qtl2pleio version 1.4.3 Index]