basic_summaries {qtl2}

Basic summaries of a cross2 object

Description

Basic summaries of a cross2 object.

Usage

n_ind(cross2)

n_ind_geno(cross2)

n_ind_pheno(cross2)

n_ind_covar(cross2)

n_ind_gnp(cross2)

ind_ids(cross2)

ind_ids_geno(cross2)

ind_ids_pheno(cross2)

ind_ids_covar(cross2)

ind_ids_gnp(cross2)

n_chr(cross2)

n_founders(cross2)

founders(cross2)

chr_names(cross2)

tot_mar(cross2)

n_mar(cross2)

marker_names(cross2)

n_pheno(cross2)

pheno_names(cross2)

n_covar(cross2)

covar_names(cross2)

n_phenocovar(cross2)

phenocovar_names(cross2)

Arguments

cross2

An object of class "cross2", as output by read_cross2(). For details, see the R/qtl2 developer guide.

Value

Variously a number, vector of numbers, or vector of character strings.

Functions

• n_ind(): Number of individuals (either genotyped or phenotyped)

• n_ind_geno(): Number of genotyped individuals

• n_ind_pheno(): Number of phenotyped individuals

• n_ind_covar(): Number of individuals with covariate data

• n_ind_gnp(): Number of individuals with both genotype and phenotype data

• ind_ids(): IDs of individuals (either genotyped or phenotyped)

• ind_ids_geno(): IDs of genotyped individuals

• ind_ids_pheno(): IDs of phenotyped individuals

• ind_ids_covar(): IDs of individuals with covariate data

• ind_ids_gnp(): IDs of individuals with both genotype and phenotype data

• n_chr(): Number of chromosomes

• n_founders(): Number of founder strains

• founders(): Names of founder strains

• chr_names(): Chromosome names

• tot_mar(): Total number of markers

• n_mar(): Number of markers on each chromosome

• marker_names(): Marker names

• n_pheno(): Number of phenotypes

• pheno_names(): Phenotype names

• n_covar(): Number of covariates

• covar_names(): Covariate names

• n_phenocovar(): Number of phenotype covariates

• phenocovar_names(): Phenotype covariate names

See Also

summary.cross2()