plot.scanoneperm {qtl} | R Documentation |
Plot permutation results for a single-QTL genome scan
Description
Plot a histogram of the permutation results from a single-QTL genome scan.
Usage
## S3 method for class 'scanoneperm'
plot(x, lodcolumn=1, ...)
Arguments
x |
An object of class |
lodcolumn |
This indicates the LOD score column to plot. This should be a single number between 1 and the number of LOD columns in the object input. |
... |
Passed to the function |
Details
The function plots a histogram of the permutation results obtained by
scanone
when n.perm
is specified. If
separate permutations were performed for the autosomes and the X
chromosome (using perm.Xsp=TRUE
), separate histograms are given.
Value
None.
Author(s)
Karl W Broman, broman@wisc.edu
See Also
Examples
data(fake.bc)
fake.bc <- calc.genoprob(fake.bc)
operm <- scanone(fake.bc, method="hk", n.perm=100)
plot(operm)
[Package qtl version 1.66 Index]