plot.rfmatrix {qtl} | R Documentation |
Plot recombination fractions or LOD scores for a single marker
Description
Plot a slice (corresponding to a single marker) through the pairwise
recombination fractions or LOD scores calculated by
est.rf
and extracted with pull.rf
.
Usage
## S3 method for class 'rfmatrix'
plot(x, marker, ...)
Arguments
x |
An object of class |
marker |
A single marker name, as a character string. |
... |
Optional arguments passed to |
Value
An object of class "scanone"
(as output by scanone
,
and which may be summarized by summary.scanone
or plotted
with plot.scanone
), containing the estimated recombination
fractions or LOD scores for the input marker against all others.
Author(s)
Karl W Broman, broman@wisc.edu
See Also
Examples
data(fake.f2)
fake.f2 <- est.rf(fake.f2)
marker <- markernames(fake.f2, chr=5)[6]
lod <- pull.rf(fake.f2, "lod")
plot(lod, marker, bandcol="gray70")
[Package qtl version 1.66 Index]