CalExpRqPCR {qPCRtools} | R Documentation |
Calculate expression using standard curve.
Description
Calculate expression using standard curve.
Arguments
cq.table |
The data frame of the position and cq value. |
design.table |
The data frame of the position and corresponding information. |
correction |
Correct expression value by reference gene. |
ref.gene |
The name of reference gene. |
ref.group |
The name of reference group. |
stat.method |
Statistical method. |
fig.type |
Output image type, 'box' represents 'boxplot', 'bar' represents 'barplot'. |
fig.ncol |
Number of columes of figure. |
Value
A list contain a table and a figure.
Author(s)
Xiang LI <lixiang117423@gmail.com>
Examples
df1.path <- system.file("examples", "cal.expre.rqpcr.cq.txt", package = "qPCRtools")
df2.path <- system.file("examples", "cal.expre.rqpcr.design.txt", package = "qPCRtools")
cq.table <- read.table(df1.path, header = TRUE)
design.table <- read.table(df2.path, header = TRUE)
CalExpRqPCR(cq.table,
design.table,
ref.gene = NULL,
ref.group = "CK",
stat.method = "t.test",
fig.type = "box",
fig.ncol = NULL
) -> res
res[["table"]]
res[["figure"]]
[Package qPCRtools version 1.0.1 Index]