hwd {purgeR} | R Documentation |
Deviation from Hardy-Weinberg equilibrium
Description
Computes the deviation from Hardy-Weinberg equilibrium following Caballero and Toro (2000).
Usage
hwd(ped, reference = NULL)
Arguments
ped |
A dataframe containing the pedigree. Individual (id), maternal (dam), and paternal (sire) identities are mandatory columns. |
reference |
A string naming a column indicating whether individuals belong to the reference population or not. Column must be boolean or coercible to boolean type. |
Value
A numeric value indicating the deviation from Hardy-Weinberg equilibrium.
References
Caballero A, Toro M. 2000. Interrelations between effective population size and other pedigree tools for the management of conserved populations. Genet. Res. 75: 331-343.
See Also
[Package purgeR version 1.8.2 Index]