| ancestors {purgeR} | R Documentation |
Individuals to be evaluated in purging analyses
Description
Returns a boolean vector indicating what individuals are suitable for purging analyses, given a measure of fitness. Individuals with NA values of fitness, and that do not have descendants with non-NA fitness values, are excluded.
Usage
ancestors(ped, reference, rp_idx, nboot = 10000L, seed = NULL, skip_Ng = FALSE)
Arguments
ped |
A dataframe containing the pedigree. Individual (id), maternal (dam), and paternal (sire) identities are mandatory columns. |
reference |
A string naming a column indicating whether individuals belong to the reference population or not. Column must be boolean or coercible to boolean type. |
rp_idx |
Vector containing the indexes of individuals of the RP |
nboot |
Number of bootstrap iterations (for computing Ng). |
seed |
Sets a seed for the random number generator. |
skip_Ng |
Skip Ng computation or not (FALSE by default). |
Value
Boolean vector indicating what individuals will be evaluated.