pureseqtmr {pureseqtmr} | R Documentation |
pureseqtmr: estimate the topoplogy of membrane proteins
Description
Proteins reside in either the cell plasma of in the cell membrane. A membrane protein goes through the membrane at least once. There are multiple ways to span this hydrophobic layer. One common structure is the transmembrane (alpha) helix (TMH). Given the amino acid sequence of a membrane protein, this package predicts which parts of the protein are TMHs
Author(s)
Richèl J.C. Bilderbeek
Examples
if (is_pureseqtm_installed()) {
# Obtain an example filename
fasta_filename <- get_example_filename("1bhaA.fasta")
# Get the topology as a tibble
topology <- predict_topology(fasta_filename)
# show the topology
plot_topology(topology)
}
[Package pureseqtmr version 1.4 Index]