create_pureseqtm_files {pureseqtmr} | R Documentation |
Create the five PureseqTM output files, by running PureseqTM.
Description
Create the five PureseqTM output files, by running PureseqTM.
Usage
create_pureseqtm_files(
fasta_filename,
folder_name = get_default_pureseqtm_folder(),
temp_folder_name = tempfile(pattern = "pureseqt_")
)
Arguments
fasta_filename |
path to a FASTA file |
folder_name |
superfolder of PureseqTM.
The superfolder's name is |
temp_folder_name |
path of a temporary folder. The folder does not need to exist. Files that are out in this folder are not automatically deleted, which is not a problem, as the default path given by tempdir is automatically cleaned by the operating system |
Value
full path to the files created
Author(s)
Richèl J.C. Bilderbeek
Examples
if (is_pureseqtm_installed()) {
fasta_filename <- get_example_filename("1bhaA.fasta")
create_pureseqtm_files(fasta_filename)
}
[Package pureseqtmr version 1.4 Index]