Meta analysis of correlation matrices to fit a homogenous correlation matrix or Gaussian graphical model. Based on meta-analytic SEM (Jak and Cheung, 2019).
cors |
A list of correlation matrices. Must contain rows and columns with NA s for variables not included in a study.
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nobs |
A vector with the number of observations per study.
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Vmats |
Optional list with 'V' matrices (sampling error variance approximations).
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Vmethod |
Which method should be used to apprixomate the sampling error variance?
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Vestimation |
How should the sampling error estimates be evaluated?
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type |
What to model? Currently only "cor" and "ggm" are supported.
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sigma_y |
Only used when type = "cov" . Either "full" to estimate every element freely, "diag" to only include diagonal elements, or a matrix of the dimensions node x node with 0 encoding a fixed to zero element, 1 encoding a free to estimate element, and higher integers encoding equality constrains. For multiple groups, this argument can be a list or array with each element/slice encoding such a matrix.
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kappa_y |
Only used when type = "prec" . Either "full" to estimate every element freely, "diag" to only include diagonal elements, or a matrix of the dimensions node x node with 0 encoding a fixed to zero element, 1 encoding a free to estimate element, and higher integers encoding equality constrains. For multiple groups, this argument can be a list or array with each element/slice encoding such a matrix.
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omega_y |
Only used when type = "ggm" . Either "full" to estimate every element freely, "zero" to set all elements to zero, or a matrix of the dimensions node x node with 0 encoding a fixed to zero element, 1 encoding a free to estimate element, and higher integers encoding equality constrains. For multiple groups, this argument can be a list or array with each element/slice encoding such a matrix.
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lowertri_y |
Only used when type = "chol" . Either "full" to estimate every element freely, "diag" to only include diagonal elements, or a matrix of the dimensions node x node with 0 encoding a fixed to zero element, 1 encoding a free to estimate element, and higher integers encoding equality constrains. For multiple groups, this argument can be a list or array with each element/slice encoding such a matrix.
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delta_y |
Only used when type = "ggm" . Either "diag" or "zero" (not recommended), or a matrix of the dimensions node x node with 0 encoding a fixed to zero element, 1 encoding a free to estimate element, and higher integers encoding equality constrains. For multiple groups, this argument can be a list or array with each element/slice encoding such a matrix.
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rho_y |
Only used when type = "cor" . Either "full" to estimate every element freely, "zero" to set all elements to zero, or a matrix of the dimensions node x node with 0 encoding a fixed to zero element, 1 encoding a free to estimate element, and higher integers encoding equality constrains. For multiple groups, this argument can be a list or array with each element/slice encoding such a matrix.
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SD_y |
Only used when type = "cor" . Either "diag" or "zero" , or a matrix of the dimensions node x node with 0 encoding a fixed to zero element, 1 encoding a free to estimate element, and higher integers encoding equality constrains. For multiple groups, this argument can be a list or array with each element/slice encoding such a matrix.
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randomEffects |
What to model for the random effects?
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sigma_randomEffects |
Only used when type = "cov" . Either "full" to estimate every element freely, "diag" to only include diagonal elements, or a matrix of the dimensions node x node with 0 encoding a fixed to zero element, 1 encoding a free to estimate element, and higher integers encoding equality constrains. For multiple groups, this argument can be a list or array with each element/slice encoding such a matrix.
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kappa_randomEffects |
Only used when randomEffects = "prec" . Either "full" to estimate every element freely, "diag" to only include diagonal elements, or a matrix of the dimensions node x node with 0 encoding a fixed to zero element, 1 encoding a free to estimate element, and higher integers encoding equality constrains. For multiple groups, this argument can be a list or array with each element/slice encoding such a matrix.
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omega_randomEffects |
Only used when randomEffects = "ggm" . Either "full" to estimate every element freely, "zero" to set all elements to zero, or a matrix of the dimensions node x node with 0 encoding a fixed to zero element, 1 encoding a free to estimate element, and higher integers encoding equality constrains. For multiple groups, this argument can be a list or array with each element/slice encoding such a matrix.
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lowertri_randomEffects |
Only used when randomEffects = "chol" . Either "full" to estimate every element freely, "diag" to only include diagonal elements, or a matrix of the dimensions node x node with 0 encoding a fixed to zero element, 1 encoding a free to estimate element, and higher integers encoding equality constrains. For multiple groups, this argument can be a list or array with each element/slice encoding such a matrix.
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delta_randomEffects |
Only used when randomEffects = "ggm" . Either "diag" or "zero" , or a matrix of the dimensions node x node with 0 encoding a fixed to zero element, 1 encoding a free to estimate element, and higher integers encoding equality constrains. For multiple groups, this argument can be a list or array with each element/slice encoding such a matrix.
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rho_randomEffects |
Only used when randomEffects = "cor" . Either "full" to estimate every element freely, "zero" to set all elements to zero, or a matrix of the dimensions node x node with 0 encoding a fixed to zero element, 1 encoding a free to estimate element, and higher integers encoding equality constrains. For multiple groups, this argument can be a list or array with each element/slice encoding such a matrix.
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SD_randomEffects |
Only used when randomEffects = "cor" . Either "diag" or "zero" , or a matrix of the dimensions node x node with 0 encoding a fixed to zero element, 1 encoding a free to estimate element, and higher integers encoding equality constrains. For multiple groups, this argument can be a list or array with each element/slice encoding such a matrix.
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vars |
Variables to be included.
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baseline_saturated |
A logical indicating if the baseline and saturated model should be included. Mostly used internally and NOT Recommended to be used manually.
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optimizer |
The optimizer to be used. Can be one of "nlminb" (the default R nlminb function), "ucminf" (from the optimr package), and C++ based optimizers "cpp_L-BFGS-B" , "cpp_BFGS" , "cpp_CG" , "cpp_SANN" , and "cpp_Nelder-Mead" . The C++ optimizers are faster but slightly less stable. Defaults to "nlminb" .
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estimator |
The estimator to be used. Currently implemented are "ML" for maximum likelihood estimation or "FIML" for full-information maximum likelihood estimation.
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sampleStats |
An optional sample statistics object. Mostly used internally.
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verbose |
Logical, should progress be printed to the console?
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bootstrap |
Should the data be bootstrapped? If TRUE the data are resampled and a bootstrap sample is created. These must be aggregated using aggregate_bootstraps ! Can be TRUE or FALSE . Can also be "nonparametric" (which sets boot_sub = 1 and boot_resample = TRUE ) or "case" (which sets boot_sub = 0.75 and boot_resample = FALSE ).
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boot_sub |
Proportion of cases to be subsampled (round(boot_sub * N) ).
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boot_resample |
Logical, should the bootstrap be with replacement (TRUE ) or without replacement (FALSE )
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... |
Arguments sent to meta_varcov
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Jak, S., and Cheung, M. W. L. (2019). Meta-analytic structural equation modeling with moderating effects on SEM parameters. Psychological methods.