fetch_uniprot_proteome {protti} | R Documentation |
Fetch proteome data from UniProt
Description
Fetches proteome data from UniProt for the provided organism ID.
Usage
fetch_uniprot_proteome(organism_id, columns = c("accession"), reviewed = TRUE)
Arguments
organism_id |
a numeric value that specifies the NCBI taxonomy identifier (TaxId) for an organism. |
columns |
a character vector of metadata columns that should be imported from UniProt (all
possible columns can be found here. For
cross-referenced database provide the database name with the prefix "xref_", e.g. |
reviewed |
a logical value that determines if only reviewed protein entries will be retrieved. |
Value
A data frame that contains all protein metadata specified in columns
for the
organism of choice.
Examples
head(fetch_uniprot_proteome(9606))