fetch_kegg {protti}

Fetch KEGG pathway data from KEGG

Description

Fetches gene IDs and corresponding pathway IDs and names for the provided organism.

Usage

fetch_kegg(species)

Arguments

species

a character value providing an abreviated species name. "hsa" for human, "eco" for E. coli and "sce" for S. cerevisiae. Additional possible names can be found for eukaryotes and for prokaryotes.

Value

A data frame that contains gene IDs with corresponding pathway IDs and names for a selected organism.

Examples

kegg <- fetch_kegg(species = "hsa")

head(kegg)