| getAtomicRecord {protein8k} | R Documentation |
getAtomicRecord
Description
Retrieve the Atomic Record from a Protein Object
Usage
getAtomicRecord(protein)
Arguments
protein |
input for a a protein object |
Format
Dataframe with 16 columns:
record_type:Type of record in this section. Generally ATOM or HETATM
serial_num: The serial number for the position of the atom in the sequence
atom_name: A name to identify the atom in a structure
alt_location_id:
residue_name: 3 character identifier for a residue
chain_id:
residue_seq_num: Number representing where in the sequence a residue is.
insert_residue_code:
x_ortho_coord: X coordinate in Ångstroms on an orthogonal plane
y_ortho_coord: Y coordinate in Ångstroms on an orthogonal plane
z_ortho_coord: Z coordinate in Ångstroms on an orthogonal plane
occupancy:
temp_factor: The amount of overall error in the measurement of an atom.
segment_id:
element_symbol: Periodic symbol representing an atom.
charge: Charge of the given atom. Can be +, -, or none at all
Details
This is an accessor function for retrieving the Atomic Record from a Protein object.
Value
Returns a dataframe containing the atomic record. There are 16 variables in this data frame.