lcmsmap {protViz}

LC-MS Map

Description

The function graphs a LC-MS map having for all charge states and each single charge state. The rt is on the x axis and the y axis represents the peptide mass.

Usage

    lcmsmap(data, charges=2:3, score.cutoff = 30, ...)

Arguments

data

an R data object as it can be obtained by mascotDat2RData.pl or by using mascots export function.

charges

a vector of charge states to be displayed.

score.cutoff

a numeric value taken as score cut-off.

...

pass arguments to plot function.

Author(s)

Christian Panse and Jonas Grossmann 2013;

References

idea taken from from the ISB TPP Pep3D view PMID: 15228367