hmm_Single_Average {protHMM} | R Documentation |
hmm_Single_Average
Description
This feature groups together rows that are related to the same amino acid. This is done using a vector
, in which
spans
and
,
in which
is the HMM matrix,
in the protein sequence,
is an ordered set of amino acids,
the variables
, the variable
when creating the vector,
and
represents Kronecker's delta.
Usage
hmm_Single_Average(hmm)
Arguments
hmm |
The name of a profile hidden markov model file. |
Value
A vector of length 400.
References
Nanni, L., Lumini, A., & Brahnam, S. (2014). An Empirical Study of Different Approaches for Protein Classification. The Scientific World Journal, 2014, 1–17.
Examples
h<- hmm_Single_Average(system.file("extdata", "1DLHA2-7", package="protHMM"))
[Package protHMM version 0.1.1 Index]