hmm_LBP {protHMM}

hmm_LBP

Description

This feature uses local binary pattern with a neighborhood of radius 1 and 8 sample points to extract features from the HMM. A 256 bin histogram is extracted as a 256 length feature vector.

Usage

hmm_LBP(hmm)

Arguments

hmm

The name of a profile hidden markov model file.

Value

A vector of length 256.

References

Li, Y., Li, L., Wang, L., Yu, C., Wang, Z., & You, Z. (2019). An Ensemble Classifier to Predict Protein–Protein Interactions by Combining PSSM-based Evolutionary Information with Local Binary Pattern Model. International Journal of Molecular Sciences, 20(14), 3511.

Examples

h<- hmm_LBP(system.file("extdata", "1DLHA2-7", package="protHMM"))