tree_from_alignment {primerTree}

Construct a neighbor joining tree from a dna alignment

Description

Construct a neighbor joining tree from a dna alignment

Usage

tree_from_alignment(dna, pairwise.deletion = TRUE, ...)

Arguments

dna

fasta dna object the tree is to be constructed from

pairwise.deletion

a logical indicating if the distance matrix should be constructed using pairwise deletion

...

furthur arguments to dist.dna

See Also

dist.dna, nj