plot_tree {primerTree} | R Documentation |
plots a tree, optionally with colored and labeled points by taxonomic rank
Description
plots a tree, optionally with colored and labeled points by taxonomic rank
Usage
plot_tree(
tree,
type = "unrooted",
main = NULL,
guide_size = NULL,
rank = NULL,
taxonomy = NULL,
size = 2,
legend_cutoff = 25,
...
)
Arguments
tree |
to be plotted, use layout_tree to layout tree. |
type |
The type of tree to plot, default unrooted. |
main |
An optional title for the plot |
guide_size |
The size of the length guide. If NULL auto detects a reasonable size. |
rank |
The rank to include, if null only the tree is plotted |
taxonomy |
A data.frame with an accession field corresponding to the tree tip labels. |
size |
The size of the colored points |
legend_cutoff |
The number of different taxa names after which the names are no longer printed. |
... |
additional arguments passed to |
Value
plot to be printed.
[Package primerTree version 1.0.6 Index]