clustalo {primerTree} | R Documentation |
Multiple sequence alignment with clustal omega
Description
Calls clustal omega to align a set of sequences of class DNAbin. Run without any arguments to see all the options you can pass to the command line clustal omega.
Usage
clustalo(x, exec = "clustalo", quiet = TRUE, original.ordering = TRUE, ...)
Arguments
x |
an object of class 'DNAbin' |
exec |
a character string with the name or path to the program |
quiet |
whether to supress output to stderr or stdout |
original.ordering |
use the original ordering of the sequences |
... |
additional arguments passed to the command line clustalo |
[Package primerTree version 1.0.6 Index]