data.preproc {precmed}

Data preprocessing Apply at the beginning of pmcount() and cvcount(), after arg.checks()

Description

Data preprocessing Apply at the beginning of pmcount() and cvcount(), after arg.checks()

Usage

data.preproc(
  fun,
  cate.model,
  ps.model,
  data,
  prop.cutoff = NULL,
  prop.multi = NULL,
  ps.method,
  initial.predictor.method = NULL
)

Arguments

fun

A function for which argument check is needed; "pm" for pmcount(), "cv" for cvcount(), and "drinf" for drcount.inference(). No default.

cate.model

A formula describing the outcome model to be fitted. The outcome must appear on the left-hand side.

ps.model

A formula describing the propensity score model to be fitted. The treatment must appear on the left-hand side. The treatment must be a numeric vector coded as 0/1. If data are from a RCT, specify ps.model as an intercept-only model.

data

A data frame containing the variables in the outcome and propensity score models; a data frame with n rows (1 row per observation).

prop.cutoff

A vector of numerical values (in (0, 1]) specifying percentiles of the estimated log CATE scores to define nested subgroups. Each element represents the cutoff to separate observations in nested subgroups (below vs above cutoff). The length of prop.cutoff is the number of nested subgroups. An equally-spaced sequence of proportions ending with 1 is recommended. Default is seq(0.5, 1, length = 6).

prop.multi

A vector of numerical values (in [0, 1]) specifying percentiles of the estimated log CATE scores to define mutually exclusive subgroups. It should start with 0, end with 1, and be of length(prop.multi) > 2. Each element represents the cutoff to separate the observations into length(prop.multi) - 1 mutually exclusive subgroups. Default is c(0, 1/3, 2/3, 1).

ps.method

A character value for the method to estimate the propensity score. Allowed values include one of: 'glm' for logistic regression with main effects only (default), or 'lasso' for a logistic regression with main effects and LASSO penalization on two-way interactions (added to the model if interactions are not specified in ps.model). Relevant only when ps.model has more than one variable.

initial.predictor.method

A character vector for the method used to get initial outcome predictions conditional on the covariates. Only applies when score.method includes 'twoReg' or 'contrastReg'. Allowed values include one of 'boosting', 'poisson' (fast), and 'gam'. Default is NULL, which assigns 'boosting' for count outcomes.

Value

A list of 6 elements: - y: outcome; vector of length n (observations) - trt: binary treatment; vector of length n - x.ps: matrix of p.ps baseline covariates (plus intercept); dimension n by p.ps + 1 - x.cate: matrix of p.cate baseline covariates; dimension n by p.cate - time: offset; vector of length n - if fun = "pm": - prop: formatted prop.cutoff - if fun = "cv" - prop.onlyhigh: formatted prop.cutoff with 0 removed if applicable - prop.bi; formatted prop.cutoff with 0 and 1 removed if applicable - prop.multi: formatted prop.multi, starting with 0 and ending with 1