con.comp {prabclus}R Documentation

Connectivity components of an undirected graph

Description

Computes the connectivity components of an undirected graph from a matrix giving the edges.

Usage

con.comp(comat)

Arguments

comat

a symmetric logical or 0-1 matrix, where comat[i,j]=TRUE means that there is an edge between vertices i and j. The diagonal is ignored.

Details

The "depth-first search" algorithm of Cormen, Leiserson and Rivest (1990, p. 477) is used.

Value

An integer vector, giving the number of the connectivity component for each vertice.

Author(s)

Christian Hennig christian.hennig@unibo.it https://www.unibo.it/sitoweb/christian.hennig/en

References

Cormen, T. H., Leiserson, C. E. and Rivest, R. L. (1990), Introduction to Algorithms, Cambridge: MIT Press.

See Also

hclust, cutree for cutted single linkage trees (often equivalent).

Examples

  set.seed(1000)
  x <- rnorm(20)
  m <- matrix(0,nrow=20,ncol=20)
  for(i in 1:20)
    for(j in 1:20)
      m[i,j] <- abs(x[i]-x[j])
  d <- m<0.2
  cc <- con.comp(d)
  max(cc) # number of connectivity components
  plot(x,cc)
  # The same should be produced by
  # cutree(hclust(as.dist(m),method="single"),h=0.2).

[Package prabclus version 2.3-3 Index]